PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31391-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 98aa    MW: 10824.3 Da    PI: 9.5419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31391-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-071458445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+   +l+ +a + +  +   +W+ +a+ +g g+++ +++ ++ 
  TRIUR3_31391-P1 14 WTPKQNKLFEQALAVHDRDtpdRWHNVAHAVGGGKSADDVRRYYE 58
                     *****************99************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.0E-71063IPR001005SANT/Myb domain
SuperFamilySSF466892.31E-111368IPR009057Homeodomain-like
CDDcd001679.85E-61461No hitNo description
PfamPF002497.7E-61458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASLSMSAAG RAGWTPKQNK LFEQALAVHD RDTPDRWHNV AHAVGGGKSA DDVRRYYELL  60
VRDVANIEAG KVPFPAYRPP CPGPNVGYEA DRLKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-26598392RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544121e-115AK354412.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007C15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961116.14e-46PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB82e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLM7ZSV82e-68M7ZSV8_TRIUA; DnaJ homolog subfamily C member 2
STRINGMLOC_17459.18e-64(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-30RAD-like 1